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Hiawatha version: 9.1
Operating System: Ubuntu Release 12.10 (quantal) 32-bit

I have just starting trying to get adminer to run under Hiawatha and am grinding my way
through an Apache config file as a reference..

After making some changes, I tried to kill Hiawatha, but she simply doesn't want to go peacefully...
cat /var/run/hiawatha.pid
29833
root@indoda:/usr/share/adminer# kill -15 29833
bash: kill: (29833) - No such process
root@indoda:/usr/share/adminer#

I then try:
ps aux |grep hiawatha
root 20766 0.0 0.0 14780 688 pts/2 T May05 0:00 sudo nano /etc/hiawatha/hiawatha.conf
root 20767 0.0 0.0 5076 452 pts/2 T May05 0:00 nano /etc/hiawatha/hiawatha.conf
root 30308 0.0 0.0 4396 812 pts/2 S+ 08:40 0:00 grep --color=auto hiawatha

and notice that the pid is different??

I also tried killing that one and also tried:
root@indoda:/usr/share/adminer# ps aux |grep hiawatha
root 20766 0.0 0.0 14780 684 pts/2 T May05 0:00 sudo nano /etc/hiawatha/hiawatha.conf
root 20767 0.0 0.0 5076 428 pts/2 T May05 0:00 nano /etc/hiawatha/hiawatha.conf
root 30380 0.0 0.0 4396 816 pts/2 S+ 08:50 0:00 grep --color=auto hiawatha
root@indoda:/usr/share/adminer# killall hiawatha
hiawatha: no process found
root@indoda:/usr/share/adminer# kill -15 30380
bash: kill: (30380) - No such process
root@indoda:/usr/share/adminer#

Seems like she is here to stay..

According to the 'ps' output, Hiawatha isn't running at all! The only things I see is the nano editor, editing the hiawatha configuration file.

try kill -15 (pid)