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Hiawatha version: 6.16 (LAMP-6.16-5.1.35-5.2.9)
Operating System: puppy431

I installed CodeIgniter_1.7.2 into /root/httpd/hiawatha.
I don't use Toolkit.
I can see welcome page to access http://lacalhost/CodeIgniter_1.7.2/?welcome.
I see "404 Not Found" to access http://lacalhost/CodeIgniter_1.7.2/welcome.

Why "?" need?
Can "?" remove?

You should ask that question at the CI forum. Why CI needs or does not need the question mark, I don't know. I didn't create CI.

CI don't need "?".
CI work to access http://lacalhost/CodeIgniter_1.7.2/welcome with apache.
I want to use hiawatha because of smaller and faster.

Try using the appropiate URL toolkit.

Thank you.
I tried.
But no good.

UrlToolkit{
ToolkitID = codeigniter
Match ^CodeIgniter_1.7.2/.* Rwerite ^CodeIgniter_1.7.2/?.*
RequestURI exists tExit
?

localhost/CodeIgniter_1.7.2/A ---> localhost/CodeIgniter_1.7.2/?A
or localhost/CodeIgniter_1.7.2/A/B ---> localhost/CodeIgniter_1.7.2/?A/B
or localhost/CodeIgniter_1.7.2/A/B/C ---> localhost/CodeIgniter_1.7.2/?A/B/C
or localhost/CodeIgniter_1.7.2/A/B/C/D ---> localhost/CodeIgniter_1.7.2/?A/B/C/D

Try this one:

UrlToolkit {
    ToolkitID = codeigniter
    RequestURI exists Return
    Match ^/CodeIgniter_1.7.2/(index\.php|images|robots\.txt) Return
    Match .* Rewrite /CodeIgniter_1.7.2/index.php
}

Ask at the CI forum what to do with the CodeIgniter_1.7.2 subdirectory. It probably requires a setting in the CI code or database.

Thak you for your advise.
But not operate.

I give up.
I cannot change WebsiteRoot and use VirtualHost in my PC.
it work fine only with Hiawatha , but not fine with LAMP.
I have no idea. Maybe it cause only my PC.

I use no-change WebsiteRoot and no-VirtualHost and to add "?" in URL by my php script.

I can assure you, CI works with Hiawatha. I used to work for a company that uses CI to create websites. Of course, I had Hiawatha installed on my developer machine.